Hokkaidō League

• Iwamizawa Hokushukai (Iwamizawa, Hokkaido)
• Nippon Express* (Sapporo, Hokkaido)
• Nippon Steel & Sumitomo Metal Muroran* (Muroran, Hokkaido)
• Norbritz Hokkaido (Sapporo, Hokkaido)
• R. Supelbe Kushiro (Kushiro, Hokkaido)
• Sapporo F.C. (Sapporo, Hokkaido)
• Hokkaido Tokachi Sky Earth (Obihiro, Hokkaido)
• Toyota Motor Hokkaido* (Tomakomai, Hokkaido)

Tōhoku League

Hạng 1

• Blancdieu Hirosaki (Hirosaki, Aomori)
• Akita Cambiare (Akita, Akita)
• Cobaltore Onagawa (Onagawa, Miyagi)
• Fuji Club 2003 (Hanamaki, Iwate)
• Ganju Iwate (Hachimantai, Iwate)
• Iwaki FC (Iwaki, Fukushima)
• Nippon Steel & Sumitomo Metal Kamaishi* (Kamaishi, Iwate)
• FC Primeiro (Fukushima prefecture)
• Saruta Kōgyō* (Akita, Akita)
• Morioka Zebra (Morioka, Iwate)

Hạng 2

Bắc

• Akita University Faculty of Medicine (Akita, Akita) (Đại học)
• Gonohe SC (Gonohe, Aomori)
• Hokuto Bank* (Akita, Akita)
• Iwate Club (Iwate, Iwate)
• Lascivo Aomori (Aomori Prefecture)
• Mizusawa Club (Ōshū, Iwate)
• North Asia University (Akita, Akita) (Đại học)
• Nu Pere Hiraizumi Maezawa (Hiraizumi, Iwate)
• Ōmiya Club (Morioka, Iwate)
• TDK Shinwakai* (Nikaho, Akita)

Nam

• Bandits Iwaki (Iwaki, Fukushima)
• Iwaki Furukawa (Iwaki, Fukushima)
• F.F.C. Matsushita (Fukushima, Fukushima)
• Merry (Fukushima, Fukushima)
• Mikawa SC (Mikawa, Yamagata)
• Oyama Club (Tsuruoka, Yamagata)
• Ricoh Industry Tohoku* (Shibata, Miyagi)
• Sendai Sasuke (Sendai, Miyagi)
• FC.Sendai.Univ (Shibata, Miyagi) (Đại học)
• Shichigahama SC (Shichigahama, Miyagi)

Kantō League (KSL)

Hạng 1

• Briobecca Urayasu (Urayasu, Chiba)
• Hitachi Building Systems* (Nishi-ku, Saitama, Saitama)
• Joyful Honda Tsukuba (Tsukuba, Ibaraki)
• Ryutsu Keizai University (Ryūgasaki, Ibaraki) (Đại học)
• Yokohama Takeru (Yokohama, Kanagawa)
• Tochigi City (Tochigi, Tochigi) (A) Renamed from "Tochigi Uva".
• Tokyo 23 (Special wards of Tokyo)
• Tokyo United (Bunkyō, Tokyo)
• TUY (Aoba-ku, Yokohama, Kanagawa) (Đại học)
• Vonds Ichihara (Ichihara, Chiba)

Hạng 2

• Criacao Shinjuku (Shinjuku, Tokyo)
• Esperanza SC (Yokohama, Kanagawa)
• Identy Mirai (Tsukubamirai, Ibaraki)
• Kanagawa Prefecture Teachers (Kanagawa Prefecture)
• Saitama SC (Saitama, Saitama)
• Toho Titanium* (Chigasaki, Kanagawa)
• Tokyo International University (Sakado, Saitama) (Đại học)
• Tonan Maebashi (Maebashi, Gunma) (A)
• Vertfee Takahara Nasu (Yaita, Tochigi)
• Waseda University A.F.C. (Nishitōkyō, Tokyo) (Đại học) Renamed from "Waseda United".

Hokushin'etsu League (HFL)

Hạng 1

• Artista Asama (Tōmi, Nagano)
• Fukui United (Awara, Fukui) Renamed from "Saurcos Fukui".
• Ueda Gentian (Ueda, Nagano)
• FC Hokuriku (Kanazawa, Ishikawa) (Đại học)
• Japan Soccer College (Seirō, Niigata) aka. College of Upward Players in Soccer (CUPS)
• '05 Kamo FC (Kamo, Niigata]) (Đại học)
• Sakai Phoenix (Sakai, Fukui)
• Toyama Shinjo Club (Toyama, Toyama)

Hạng 2

• Antelope Shiojiri (Shiojiri, Nagano)
• Nagaoka Billboard (Nagaoka, Niigata)
• CUPS Seirō (Seirō, Niigata) (Japan Soccer College)
• Hokuriku University Futures (Kanazawa, Ishikawa) (Đại học)
• '09 Keidai FC (Kamo, Niigata) (Đại học)
• FC Matsucelona (Matsumoto, Nagano) (Đại học)
• Niigata University of Health and Welfare (Niigata, Niigata) (Đại học)
• Ono FC (Ōno, Fukui)

Tōkai League

Hạng 1

• Chukyo University (Toyota, Aichi) (Đại học)
• Fujieda City Hall (Fujieda, Shizuoka)
• FC Gifu Second (Gifu, Gifu) (FC)
• FC. Ise-Shima (Shima, Mie)
• F.C. Kariya (Kariya, Aichi)
• Tokai Gakuen (Nagoya, Aichi) (Đại học)
• Toyota Shūkyūdan (Toyota, Aichi)
• Yazaki Valente (Shimada, Shizuoka)

Hạng 2

• Bonbonera Gifu (Chūnō, Gifu)
• Chukyo Univ. FC (Toyota, Aichi) (Đại học)
• Ogaki Kogans (Ōgaki, Gifu)
• Nagara Club (Gifu, Gifu)
• Nagoya Club (Nagoya, Aichi)
• Rivielta Toyokawa (Toyokawa, Aichi)
• Tokoha University Hamamatsu Campus (Hamamatsu, Shizuoka) (Đại học)
• Toyota Industries* (Kariya, Aichi)

Kansai League

Hạng 1

• Arterivo Wakayama (Wakayama, Wakayama)
• Banditonce Kakogawa (Kakogawa, Hyōgo)
• Hannan University Club (Matsubara, Osaka) (Đại học)
• Kansai University 2008 (Suita, Osaka) (Đại học)
• Lagend Shiga (Moriyama, Shiga)
• Ococias Kyoto (Kyoto, Kyoto)
• St. Andrew's FC (Izumi, Osaka) (Đại học)
• Tiamo Hirakata (Hirakata, Osaka)

Hạng 2

• Biwako Seikei Sport College Hira (Ōtsu, Shiga) (Đại học)
• Easy 02 Akashi (Akashi, Hyōgo)
• Kandai Club 2010 (Osaka, Osaka)
• Laranja Kyoto (Kyoto, Kyoto)
• Takasago Mineiro (Takasago, Hyōgo)
• Porvenir Asuka (Kashihara, Nara)
• Renaiss Gakuen Kōka (Kōka, Shiga)
• Kyoto Shiko Club (Kyoto, Kyoto)

Chūgoku League

• Baleine Shimonoseki (Shimonoseki, Yamaguchi)
• Hamada Cosmos (Hamada, Shimane)
• Fuji Xerox Hiroshima* (Hiroshima, Hiroshima)
• Harada Kogyo* (Fukuyama, Hiroshima)
• Hatsukaichi FC (Hatsukaichi, Hiroshima)
• SRC Hiroshima (Hiroshima, Hiroshima)
• International Pacific University (Okayama, Okayama) (Đại học)
• JXTG Nippon Oil & Energy Mizushima* (Kurashiki, Okayama)
• Mitsubishi Motors Mizushima* (Kurashiki, Okayama)
• NTN Okayama* (Bizen, Okayama)

Shikoku League

• Kochi United (Kōchi, Kōchi)
• Koyo Sealing Techno* (Aizumi, Tokushima)
• KUFC Nankoku (Nankoku, Kōchi)
• Llamas Kochi (Kōchi, Kōchi)
• Niisho Club (Niihama, Ehime)
• R. Velho Takamatsu (Takamatsu, Kagawa)
• Tadotsu FC (Tadotsu, Kagawa)
• FC Tokushima (Tokushima, Tokushima)

Kyūshū League (Kyu-League)

• Kaiho Bank (Naha, Okinawa)
• Kawazoe Club (Saga, Saga)
• Kumamoto Teachers (Kumamoto, Kumamoto)
• Kyushu Mitsubishi Motors* (Fukuoka, Fukuoka)
• Kyushu Sogo Sports College (Usa, Ōita)
• J.FC Miyazaki (Miyazaki, Miyazaki)
• NIFS Kanoya (Kanoya, Kagoshima) (Đại học)
• Nippon Steel & Sumitomo Metal Oita* (Ōita, Ōita)
• Okinawa SV (Uruma, Okinawa)
• Saga Lixil* (Kashima, Saga)